cohere_core

Contents:

• Standard Preprocess API
  • prep()
• Phasing API
  • Rec
    • Rec.__init__()
    • Rec.get_coherence()
    • Rec.get_image()
    • Rec.get_metric()
    • Rec.get_support()
    • Rec.init_dev()
    • Rec.init_iter_loop()
    • Rec.iterate()
    • Rec.save_res()
  • create_rec()
  • set_lib_from_pkg()
• Utils API
  • config_verifier
    • cohere_core.config_verifier
    • verify()
  • utils
    • cohere_core.utils
    • adjust_dimensions()
    • binning()
    • center_max()
    • crop_center()
    • get_central_object_extent()
    • get_good_dim()
    • get_lib()
    • get_logger()
    • get_oversample_ratio()
    • join()
    • normalize()
    • pad_center()
    • read_config()
    • read_tif()
    • resample()
    • save_metrics()
    • save_tif()
    • select_central_object()
    • threshold_by_edge()
    • write_config()
    • write_plot_errors()
  • dvc_utils
    • cohere_core.utilities.dvc_utils
    • align_arrays_pixel()
    • align_arrays_subpixel()
    • all_metrics()
    • arr_property()
    • breed()
    • center_sync()
    • check_get_conj_reflect()
    • conj_reflect()
    • correlation_err()
    • cross_correlation()
    • dftregistration()
    • dftups()
    • fast_shift()
    • gauss_conv_fft()
    • get_ccamax_cc()
    • get_metric()
    • get_norm()
    • histogram2d()
    • lucy_deconvolution()
    • pad_around()
    • pad_to_cube()
    • register_3d_reconstruction()
    • remove_ramp()
    • resample()
    • set_lib_from_pkg()
    • shift_phase()
    • shrink_wrap()
    • sub_pixel_shift()
    • use_numpy()
    • zero_phase()
    • zero_phase_cc()